1. ERANGE
ERANGE is a Python package for doing RNA-seq and ChIP-seq.
标签:RNA-Seq Alignment, RNA-Seq Quantitation, ChIP-Seq,Allele-specific transcription
2. MMSEQ
Pipeline and methodology for simultaneously estimating isoform expression and allelic imbalance in diploid organisms using RNA-seq data.
标签:Allele-specific transcription
3. PanGEA
Tool which enables a fast and user-friendly analysis of allele specific gene expression using the 454 technology.
标签:RNA-Seq, Allele-specific transcription, SNP discovery
4. Partek Genomics Suite
Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.
标签:Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
5. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
标签:Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge